Proceedings of the 2nd International Conference on Smart and Innovative Agriculture (ICoSIA 2021)

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Microsatellite Marker LEI0258 Variability in Six Indonesian Local Chicken Populations

Authors
Fatmawati Mustofa1, Aprilianna Putri Zahara N L Sari1, Akhmad Fathoni1, Heru Sasongko2, Dwi Nur Happy Hariyono3, Prabuddha Manjula4, 5, Jun Heon Lee4, Dyah Maharani1, *
1Department of Animal Breeding and Reproduction, Faculty of Animal Science, Universitas Gadjah Mada, Yogyakarta 55281, Indonesia
2Department of Animal Production, Faculty of Animal Science, Universitas Gadjah Mada, Yogyakarta 55281, Indonesia
3Department of Animal Science, Faculty of Agriculture, Universitas Khairun, Ternate 97719, Indonesia
4Division of Animal and Dairy Science, Chungnam National University, Daejeon 34134, Republic of Korea
5Department of Animal Science, Uva Wellassa University, Badulla Sri Lanka.
*Corresponding author. Email: d.maharani@ugm.ac.id
Corresponding Author
Dyah Maharani
Available Online 10 March 2022.
DOI
10.2991/absr.k.220305.055How to use a DOI?
Keywords
Microsatellite; Marker; LEI0258; MHC; Indonesian local chicken
Abstract

The microsatellite LEI0258 is a genetic marker for chicken MHC haplotypes and can be used to study the influence of population genetics on immune responses. In this study, we investigated the variability of the LEI0258 locus in 173 chickens from six Indonesian local chicken populations (Black Kedu Pelung, Sentul, Merawang, Nunukan, and Gaga). The LEI0258 locus was found to be polymorphic in overall populations with a total of 25 alleles. The observed and expected heterozygosity values ranged from 0.565 (Gaga) to 0.967 (Pelung) with an overall mean of 0.855 and from 0.715 (Gaga) to 0.879 (Merawang) with an overall mean 0.829, respectively. The decreasing heterozygosity indicated that the population’s genetic diversity had decreased. The average PIC values ranged from 0.687 (Gaga) to 0.870 (Merawang), overall studied chicken was 0.811. All the chicken populations were in Hardy Weinberg equilibrium, except for the Gaga chicken.

Copyright
© 2022 The Authors. Published by Atlantis Press International B.V.
Open Access
This is an open access article under the CC BY-NC license.

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Volume Title
Proceedings of the 2nd International Conference on Smart and Innovative Agriculture (ICoSIA 2021)
Series
Advances in Biological Sciences Research
Publication Date
10 March 2022
ISBN
978-94-6239-550-3
ISSN
2468-5747
DOI
10.2991/absr.k.220305.055How to use a DOI?
Copyright
© 2022 The Authors. Published by Atlantis Press International B.V.
Open Access
This is an open access article under the CC BY-NC license.

Cite this article

risenwbib
TY  - CONF
AU  - Fatmawati Mustofa
AU  - Aprilianna Putri Zahara N L Sari
AU  - Akhmad Fathoni
AU  - Heru Sasongko
AU  - Dwi Nur Happy Hariyono
AU  - Prabuddha Manjula
AU  - Jun Heon Lee
AU  - Dyah Maharani
PY  - 2022
DA  - 2022/03/10
TI  - Microsatellite Marker LEI0258 Variability in Six Indonesian Local Chicken Populations
BT  - Proceedings of the 2nd International Conference on Smart and Innovative Agriculture (ICoSIA 2021)
PB  - Atlantis Press
SP  - 355
EP  - 362
SN  - 2468-5747
UR  - https://doi.org/10.2991/absr.k.220305.055
DO  - 10.2991/absr.k.220305.055
ID  - Mustofa2022
ER  -