Learn from the Information Contained in the False Splice Sites as well as in the True Splice Sites using SVM

DOI

10.2991/iske.2007.13How to use a DOI?

Keywords

SVM, MCM, WAM, DTF, UTF

Abstract

In splice sites prediction, the information contained in false splice sites is often ignored, which has been recognized to be very valuable [1]-[2]. In this paper, three novel encoding approaches, MCM with DTF, MCM with UTF and WAM with UTF, are described, all of which consider the information both in true and false splice sites. From the comparison with 5 other encoding methods, we can conclude: (1) SVM can benefit from the information contained in false splice sites as well as in true splice sites. (2) The performance of MCM with DTF and WAM with DTF is comparative, both of which give the better performance nearly in all cases. (3) The performance of binary vector encoding method is surprisingly good, the potential of which need to be further investigated.

Copyright

© 2007, the Authors. Published by Atlantis Press.

Open Access

This is an open access article distributed under the CC BY-NC license (http://creativecommons.org/licenses/by-nc/4.0/).

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TY  - CONF
AU  - Shuo Xu
AU  - Fujing Ma
AU  - Lan Tao
PY  - 2007/10
DA  - 2007/10
TI  - Learn from the Information Contained in the False Splice Sites as well as in the True Splice Sites using SVM
BT  - Proceedings of the 2007 International Conference on Intelligent Systems and Knowledge Engineering (ISKE 2007)
PB  - Atlantis Press
SP  - 65
EP  - 71
SN  - 1951-6851
UR  - https://doi.org/10.2991/iske.2007.13
DO  - 10.2991/iske.2007.13
ID  - Xu2007/10
ER  -