Proceedings of the International Conference on Tropical Agrifood, Feed and Fuel (ICTAFF 2021)

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The Bioinformatics Analysis in the Whole Genome mtDNA Sequence of Chickens (Gallus gallus)

Authors
Suhardi Suhardi1, *, Widya Pintaka Bayu Putra2, Rofik Rofik3, Servis Simanjuntak1, Khoiru Indana1, Ari Wibowo1
1Department of Animal Science, Agriculture Faculty, Mulawarman University, Samarinda, Indonesia, 75123
2Research Center for Biotechnology, Indonesian Institute of Science, Bogor, Indonesia, 16911
3Livestock and Animal Health Services, Provincial Government of East Kalimantan, Bhayangkara Rd. No.54, Samarinda, East Kalimantan, Indonesia 75121
*Corresponding author. Email: suhardi@faperta.unmul.ac.id
Corresponding Author
Suhardi Suhardi
Available Online 7 January 2022.
DOI
10.2991/absr.k.220102.030How to use a DOI?
Keywords
Bioinformatics; Chicken; GenBank; Genetic diversity; mtDNA
Abstract

Chicken is important livestock in the world that is kept for egg and meat productions. This study was aimed to perform a bioinformatics analysis in the whole genome mtDNA (16,979 bp) of many chicken breeds. Total 84 whole-genome mtDNA sequences were used in this study and obtained from the reference sequence (GenBank). Four molecular packages of BioEdit, MEGA-X, DNAsp, and Arlequin were used in this study to analyze the observed sequences. Therefore, the whole genome mtDNA sequence of birds in this study was originated from Asia, the USA, and New Guinea. Research showed that a total of 445 mutation sites and 81 haplotypes were obtained in this study. Thus, the nucleotide diversity in the observed sequences included of high (0.99). In addition, a total of 10 clusters were observed according to the phylogenetic analysis with the UPGMA method. In conclusion, a close genetic relationship was observed among chickens of Asia based on the median-joining network. Meanwhile, the geographical factors were contributed about 9.12% in a sequence variation.

Copyright
© 2022 The Authors. Published by Atlantis Press International B.V.
Open Access
This is an open access article under the CC BY-NC license.

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Volume Title
Proceedings of the International Conference on Tropical Agrifood, Feed and Fuel (ICTAFF 2021)
Series
Advances in Biological Sciences Research
Publication Date
7 January 2022
ISBN
978-94-6239-510-7
ISSN
2468-5747
DOI
10.2991/absr.k.220102.030How to use a DOI?
Copyright
© 2022 The Authors. Published by Atlantis Press International B.V.
Open Access
This is an open access article under the CC BY-NC license.

Cite this article

risenwbib
TY  - CONF
AU  - Suhardi Suhardi
AU  - Widya Pintaka Bayu Putra
AU  - Rofik Rofik
AU  - Servis Simanjuntak
AU  - Khoiru Indana
AU  - Ari Wibowo
PY  - 2022
DA  - 2022/01/07
TI  - The Bioinformatics Analysis in the Whole Genome mtDNA Sequence of Chickens (Gallus gallus)
BT  - Proceedings of the  International Conference on Tropical Agrifood, Feed and Fuel (ICTAFF 2021)
PB  - Atlantis Press
SP  - 202
EP  - 209
SN  - 2468-5747
UR  - https://doi.org/10.2991/absr.k.220102.030
DO  - 10.2991/absr.k.220102.030
ID  - Suhardi2022
ER  -