Bioinformatic Analysis of Strawberry NDH-H Gene

DOI

10.2991/bbbs-18.2018.31How to use a DOI?

Keywords

NDH-H; research object; physical and chemical properties

Abstract

NDH-H has always been known as a key factor of Hydrogen ion metabolism pathway in plant testa. Recent studies show that chlororespiration and cyclic electron flow mediated by NDH may coordinate to alleviate the over-reduction of stroma, thus to keep operation of CO2 assimilation at certain extent under heat stress condition. In this research we chosen NDH-H gene of 13 kinds species, downloaded their nucleotide and protein sequence from NCBI as the research object, found strawberry NDH-H gene via bioinformation analyses, constructed phylogenetic tree. At the same time, we analyzed the strawberry NDH-H gene of physical and chemical properties and its protein structure and so on. The phylogenetic tree showed that strawberry and Malus x domestica were closest relative. By the protein prediction, we found that the protein owed one proper signal peptide without obvious transmembrane regions.

Copyright

© 2018, the Authors. Published by Atlantis Press.

Open Access

This is an open access article distributed under the CC BY-NC license (http://creativecommons.org/licenses/by-nc/4.0/).

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TY  - CONF
AU  - Xiran Wang
AU  - Jiangang He
AU  - Haoru Tang
PY  - 2018/04
DA  - 2018/04
TI  - Bioinformatic Analysis of Strawberry NDH-H Gene
BT  - Proceedings of the 2018 International Workshop on Bioinformatics, Biochemistry, Biomedical Sciences (BBBS 2018)
PB  - Atlantis Press
SP  - 141
EP  - 144
SN  - 2468-5747
UR  - https://doi.org/10.2991/bbbs-18.2018.31
DO  - 10.2991/bbbs-18.2018.31
ID  - Wang2018/04
ER  -